NAME

       contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords

DESCRIPTION

       contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole chromosome coords in
       a GTF, GFF, or BED file

              contig_to_chr_coords.py                        <format_flag>                       <seq_contig.md>
              <junctions.bed|transcripts.gff|transcripts.gtf>

              for help use --help

contig_to_chr_coords 2.1.1+dfsg1-1                December 2017                          CONTIG_TO_CHR_COORDS(1)