bionic (1) csb-bfite.1.gz

NAME

       csb-bfite  -  models  non-rigid  displacements  in  protein  ensembles  with outlier-tolerant probability
       distributions

DESCRIPTION

       usage: csb-bfite [-h] [-c CHAIN] [-s {student,k}] [-a ALIGNMENT] [-o OUTFILE]

              [-n NITER] pdb

       Python application for robust  structure  superposition  of  an  ensemble  of  structures.  bfite  models
       non-rigid displacements in protein ensembles with outlier-tolerant probability distributions.

   positional arguments:
       pdb    full path to the ensemble

   optional arguments:
       -h, --help
              show this help message and exit

       -c CHAIN, --chain CHAIN
              Chain (default=A)

       -s {student,k}, --scalemixture {student,k}
              Scale mixture distribution (default=student)

       -a ALIGNMENT, --alignment ALIGNMENT
              Alignment  in fasta format defining equivalent positions Assumes that chain1 is the first sequence
              of the alignment and chain2 the second sequence

       -o OUTFILE, --outfile OUTFILE
              file to which the rotated second structure will be written (default=bfit.pdb)

       -n NITER, --niter NITER
              Number of optimization steps (default=200)

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.