NAME

       dotmatcher - Draw a threshold dotplot of two sequences

SYNOPSIS

       dotmatcher -asequence sequence -bsequence sequence [-matrixfile matrix] [-windowsize integer]
                  [-threshold integer] -stretch toggle -graph graph -xygraph xygraph

       dotmatcher -help

DESCRIPTION

       dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Alignment:Dot plots" command group(s).

OPTIONS

   Input section
       -asequence sequence

       -bsequence sequence

       -matrixfile matrix
           This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62'
           (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
           directory of the EMBOSS installation.

   Additional section
       -windowsize integer
           Default value: 10

       -threshold integer
           Default value: 23

   Output section
       -stretch toggle
           Display a non-proportional graph Default value: N

       -graph graph

       -xygraph xygraph

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       dotmatcher is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                     DOTMATCHER(1e)