bionic (1) fastq_quality_filter.1.gz

NAME

       fastq_quality_filter - Filters sequences based on quality

DESCRIPTION

       usage:  fastq_quality_filter  [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit
       0.0.14 by A. Gordon (assafgordon@gmail.com)

       [-h]   = This helpful help screen.

       [-q N] = Minimum quality score to keep.

       [-p N] = Minimum percent of bases that must have [-q] quality.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
              = FASTA/Q input file. default is STDIN.

              [-o OUTFILE] = FASTA/Q output file. default is STDOUT.  [-v]         = Verbose - report number  of
              sequences.

       If [-o] is specified,
              report will be printed to STDOUT.

              If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.

       [-Q N] = FASTQ ASCII offset. Default is 33.

SEE ALSO

       The quality of this automatically generated manpage might be insufficient.  It is suggested to visit

              http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.