NAME

       fdnadist - Nucleic acid sequence Distance Matrix program

SYNOPSIS

       fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array
                -categories properties [-weights properties] -gammacoefficient float -invarfrac float
                -ttratio float -freqsfrom toggle -basefreq array [-lower boolean] [-humanreadable boolean]
                -outfile outfile [-printdata boolean] [-progress boolean]

       fdnadist -help

DESCRIPTION

       fdnadist is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

   Input section
       -sequence seqsetall
           File containing one or more sequence alignments

       -method list
           Default value: F84 distance model

       -gamma list
           Default value: No distribution parameters used

       -ncategories integer
           Default value: 1

       -rate array
           Default value: 1.0

       -categories properties
           File of substitution rate categories

       -weights properties

   Additional section
       -gammacoefficient float
           Default value: 1

       -invarfrac float
           Default value: 0.0

       -ttratio float
           Default value: 2.0

       -freqsfrom toggle
           Default value: Y

       -basefreq array
           Default value: 0.25 0.25 0.25 0.25

       -lower boolean
           Default value: N

       -humanreadable boolean
           Default value: @($(method)==s?Y:N)

   Output section
       -outfile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fdnadist is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                       FDNADIST(1e)