NAME

       fdnapars - DNA parsimony algorithm

SYNOPSIS

       fdnapars -sequence seqsetall -intreefile tree [-weights properties] [-maxtrees integer] -thorough toggle
                -rearrange boolean [-transversion boolean] -njumble integer -seed integer [-outgrno integer]
                [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile
                [-printdata boolean] [-progress boolean] [-stepbox boolean] [-ancseq boolean]
                [-treeprint boolean] -dotdiff boolean

       fdnapars -help

DESCRIPTION

       fdnapars is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

   Input section
       -sequence seqsetall
           File containing one or more sequence alignments

       -intreefile tree

       -weights properties

   Additional section
       -maxtrees integer
           Default value: 10000

       -thorough toggle
           Default value: Y

       -rearrange boolean
           Default value: Y

       -transversion boolean
           Default value: N

       -njumble integer

       -seed integer
           Default value: 1

       -outgrno integer

       -thresh toggle
           Default value: N

       -threshold float
           Default value: 1.0

   Output section
       -outfile outfile

       -trout toggle
           Default value: Y

       -outtreefile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

       -stepbox boolean
           Default value: N

       -ancseq boolean
           Default value: N

       -treeprint boolean
           Default value: Y

       -dotdiff boolean
           Default value: Y

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fdnapars is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                       FDNAPARS(1e)