NAME

       fdolpenny - Penny algorithm Dollo or polymorphism

SYNOPSIS

       fdolpenny -infile discretestates [-weights properties] [-ancfile properties] [-thresh toggle]
                 -threshold float [-howmany integer] [-howoften integer] [-simple boolean] [-method list]
                 -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean]
                 [-treeprint boolean] [-ancseq boolean] [-stepbox boolean]

       fdolpenny -help

DESCRIPTION

       fdolpenny is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

   Input section
       -infile discretestates
           File containing one or more data sets

       -weights properties

       -ancfile properties

   Additional section
       -thresh toggle
           Default value: N

       -threshold float
           Default value: 1

       -howmany integer
           Default value: 1000

       -howoften integer
           Default value: 100

       -simple boolean
           Default value: Y

       -method list
           Default value: d

   Output section
       -outfile outfile

       -trout toggle
           Default value: Y

       -outtreefile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

       -treeprint boolean
           Default value: Y

       -ancseq boolean
           Default value: N

       -stepbox boolean
           Default value: N

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fdolpenny is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                      FDOLPENNY(1e)