NAME

       ffitch - Fitch-Margoliash and Least-Squares Distance Methods

SYNOPSIS

       ffitch -datafile distances -intreefile tree [-matrixtype list] [-minev boolean] -njumble integer
              -seed integer [-outgrno integer] [-power float] -lengths boolean -negallowed boolean
              -global boolean [-replicates boolean] -outfile outfile [-trout toggle] -outtreefile outfile
              [-printdata boolean] [-progress boolean] [-treeprint boolean]

       ffitch -help

DESCRIPTION

       ffitch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Phylogeny:Distance matrix" command group(s).

OPTIONS

   Input section
       -datafile distances
           File containing one or more distance matrices

       -intreefile tree

   Additional section
       -matrixtype list
           Default value: s

       -minev boolean
           Default value: N

       -njumble integer

       -seed integer
           Default value: 1

       -outgrno integer

       -power float
           Default value: 2.0

       -lengths boolean
           Default value: N

       -negallowed boolean
           Default value: N

       -global boolean
           Default value: N

       -replicates boolean
           Default value: N

   Output section
       -outfile outfile

       -trout toggle
           Default value: Y

       -outtreefile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

       -treeprint boolean
           Default value: Y

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       ffitch is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                         FFITCH(1e)