NAME

       fpars - Discrete character parsimony

SYNOPSIS

       fpars -infile discretestates -intreefile tree [-weights properties] -method list [-maxtrees integer]
             -thorough toggle -rearrange boolean -njumble integer -seed integer [-outgrno integer]
             [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile
             [-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]
             -dotdiff boolean

       fpars -help

DESCRIPTION

       fpars is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
       part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

   Input section
       -infile discretestates
           File containing one or more data sets

       -intreefile tree

       -weights properties

   Additional section
       -method list
           Default value: Wagner

       -maxtrees integer
           Default value: 100

       -thorough toggle
           Default value: Y

       -rearrange boolean
           Default value: Y

       -njumble integer

       -seed integer
           Default value: 1

       -outgrno integer

       -thresh toggle
           Default value: N

       -threshold float
           Default value: 1

   Output section
       -outfile outfile

       -trout toggle
           Default value: Y

       -outtreefile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

       -treeprint boolean
           Default value: Y

       -stepbox boolean
           Default value: N

       -ancseq boolean
           Default value: N

       -dotdiff boolean
           Default value: Y

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fpars is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                          FPARS(1e)