NAME

       fprotdist - Protein distance algorithm

SYNOPSIS

       fprotdist -sequence seqsetall [-ncategories integer] -rate array -categories properties
                 [-weights properties] -method list -gamma list -gammacoefficient float -invarcoefficient float
                 -aacateg list -whichcode list -ease float -ttratio float -basefreq array -outfile outfile
                 [-printdata boolean] [-progress boolean]

       fprotdist -help

DESCRIPTION

       fprotdist is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

   Input section
       -sequence seqsetall
           File containing one or more sequence alignments

       -ncategories integer
           Default value: 1

       -rate array

       -categories properties

       -weights properties

   Additional section
       -method list
           Default value: j

       -gamma list
           Default value: c

       -gammacoefficient float
           Default value: 1

       -invarcoefficient float
           Default value: 1

       -aacateg list
           Default value: G

       -whichcode list
           Default value: u

       -ease float
           Default value: 0.457

       -ttratio float
           Default value: 2.0

       -basefreq array
           Default value: 0.25 0.25 0.25 0.25

   Output section
       -outfile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       fprotdist is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

PHYLIPNEW 3.69+20100721                            08/11/2010                                      FPROTDIST(1e)