bionic (1) itksnap.1.gz

NAME

       itksnap - semi-automatic segmentation of structures in 3D images

SYNOPSIS

       itksnap [options] [grey_image]

DESCRIPTION

       SNAP  provides  semi-automatic  segmentation  of  structures  in medical images (e.g.  magnetic resonance
       images of the brain) using active contour methods, as well as manual delineation  and  image  navigation.
       Noteworthy features are:

       * Linked cursor for seamless 3D navigation

       * Manual segmentation in three orthogonal planes at once

       * Support for many different 3D image formats, including NIfTI

       * Support for concurrent, linked viewing and segmentation of multiple images

       * Limited support for color images (e.g., diffusion tensor maps)

       * 3D cut-plane tool for fast post-processing of segmentation results

OPTIONS

       --grey, -g FILE
              Load greyscale image FILE (optional)

       --segmentation, -s FILE
              Load segmentation image FILE

       --labels, -l FILE
              Load label description file FILE

       --rgb FILE
              Load RGB image FILE (as overlay if combined with -g)

AUTHOR

       ITK-SNAP was written by Paul A. Yushkevichi, Hui Zhang, Casey Goodlett, Timothy Burke, Nicholas Tustison,
       Guido Gerig, Silvio Turello, Joachim Schlegel, Gabor Szekely, Chris Wynn, Arun Neelamkavil, David  Gregg,
       Eric Larsen, Sanjay Sthapit, Sean Ho, Ashraf Farrag, Amy Henderson, Robin Munesato, Ming Yu, Nathan Moon,
       Thorsten Scheuermann, Konstantin Bobkov, Nathan Talbert, Yongjik Kim, Pierre Fillard, Daniel S.  Fritsch,
       Stephen R. Aylward

       This  manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may
       be used by others).

SEE ALSO

       Manual and tutorial: http://itksnap.org