bionic (1) last-map-probs.1.gz

NAME

       last-map-probs - Add extra column with mapping probabilities

SYNOPSIS

       last-map-probs [options] lastal-alignments

DESCRIPTION

       Calculate  a  mismap probability for each alignment.  This is the probability that the alignment does not
       reflect the origin of the query sequence, assuming that one reported alignment does reflect the origin of
       each query.

OPTIONS

       -h, --help
              show this help message and exit

       -m M, --mismap=M
              don't write alignments with mismap probability > M (default: 0.01)

       -s S, --score=S
              don't write alignments with score < S (default: e+t*ln[1000])