Provided by: python-surfer_0.7-2_all 
NAME
pysurfer - visualize cortical surface reconstruction from Freesurfer
DESCRIPTION
22:18:01: Warning: Mismatch between the program and library build versions detected. The library used
3.0 (wchar_t,compiler with C++ ABI 1010,wx containers,compatible with 2.8), and wxPython used 3.0
(wchar_t,compiler with C++ ABI 1009,wx containers,compatible with 2.8). usage: pysurfer subject_id
hemisphere surface [options]
PySurfer is a package for visualization and interaction with cortical surface representations of
neuroimaging data from Freesurfer.
The command-line program pysurfer is designed to largely replicate Freesufer's tksurfer command-line
interface in the format and style of arguments it accepts, and, like tksurfer, invoking it will
initialize a visualization in an external window and begin an IPython session in the terminal, through
which the visualization can be manipulated.
The visualization interface is exposed through methods on the `brain' variable that will exist in IPython
namespace when the program finishes loading. Please see the PySurfer documentation for more information
about how to interact with the Brain object.
positional arguments:
subject_id
subject id as in subjects dir
hemi hemisphere to load
surf surface mesh (e.g. 'pial', 'inflated')
optional arguments:
-h, --help
show this help message and exit
-morphometry MEAS
load morphometry file (e.g. thickness, curvature)
-annotation ANNOT
load annotation (by name or filepath)
-label LABEL
load label (by name or filepath
-borders
only show label/annot borders
-overlay FILE
load scalar overlay file
-range MIN MAX
overlay threshold and saturation point
-min MIN
overlay threshold
-max MAX
overlay saturation point
-sign {abs,pos,neg}
overlay sign
-name NAME
name to use for the overlay
-size [SIZE]
size of the display window (in pixels)
-background COLOR
background color for display
-foreground COLOR
foreground color for display
-cortex COLOR
colormap or color for rendering the cortex
-alpha COLOR
specifies opacity for the cortical surface
-title TITLE
title to use for the figure
-views [VIEWS [VIEWS ...]]
view list (space-separated) to use