NAME

       CADD - A computer aided drug design using Vision

SYNOPSIS

       runCADD [options] [filenames]

DESCRIPTION

       This manual page is an almost literal translation of the output provided by runCADD -h command.

OPTIONS

       A  summary  of  options  is  included  below.   For  a  complete  description, refer to the tutorials and
       documentation that is available online.

       Files <filenames> ending in "net.py" will be laoded as networks in vision.  Other files will be  executed
       as Python scripts in which "ed" refers to the VisualProgrammingEnvironment instance.

       -h, --help
              Show summary of options.

       -e, --runAndExit
              run the networks and exit

       -p, --ipython
              create an ipython shell instead of a python shell

       -r, --run
              run the networks on the command line

       -s, --noSplash
              doesn't show the CADD splash screen (works only if registered)

       -t, --NoTerminal
              vision provides its own shell (under menu 'Edit') instead of the terminal

       --resourceFolder foldername
              stores resource file under .name (defaults to .mgltools)

       port values can be passed on the command line (but not to macros):
                    Network_net.py nodeName:portName:value

SEE ALSO

       http://mgltools.scripps.edu

AUTHOR

       runCADD   was   written   by  researchers  of  the  Molecular  Graphics  Lab  at  the  Scripps  Institute
       <mgltools@scripps.edu>.

       This manual page was written by Thorsten Alteholz <debian@alteholz.de>, for the Debian project  (but  may
       be used by others).

                                                  July  1, 2011                                          CADD(1)