bionic (1) sdpMatcher.1.gz

Provided by: blasr_5.3+0-1build1_amd64 bug

NAME
       sdpMatcher - nucleotide sequence matching using sparse dynamic programming


SYNOPSIS
       sdpMatcher  query  target  k  [-indelRate  delta] [-showalign] [-printsw] [-noRefine] [-indel i] [-local]
       [-match m] [-sdpIndel i]


DESCRIPTION
       Performs sparse dynamic programming (SDP) between pairs of sequences as  they  are  given  in  two  FASTA
       files, called query and target for convenience. k is the size of the k-mer used for the SDP algorithm.


SEE ALSO
       blasr(1) loadPulses(1) pls2fasta(1) samFilter(1) samtoh5(1) samtom4(1) sawriter(1) toAfg(1)