NAME

       subread-fullscan - scans the entire genome and reports all matches of a specified sequence

USAGE

       subread-fullscan [options] -i <index_name> <read_string>

       Required arguments:

       -i <string>
              Base name of the index.

       read_string
              The read bases.

       Optional arguments:

       -m <float>
              The minimum fraction of matched bases in the read, 0.8 by default

subread-fullscan 1.6.0+dfsg                       November 2017                              SUBREAD-FULLSCAN(1)