NAME

       Algorithm::HMM::Report - Report object for the Algorithm::HMM package.

DESCRIPTION

       The Algorithm::HMM::Report object is returned by the Algorithm::HMM search method.  It
       contains the sets of global and domain hits returned by the model.

SYNOPSIS

         # Search the HMM model.  An Algorithm::HMM::Report object is returned.
         my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE");

         # Get all the global hits from the report object.
         my @ghits = $rep->global_hits();

         # Get all the domain hits from the report object.
         my @dhits = $rep->domain_hits();

METHODS

         my @ghits = $rep->global_hits();
         my @dhits = $rep->domain_hits();

       The global_hits() and domain_hits() methods return lists of Algorithm::HMM::Hit::Global
       and Algorithm::HMM::Hit::Domain objects respectively.  A global hit is a match across the
       entire model, while a domain hit is a match on a smaller subsequence of the model.

AUTHOR

       The Algorithm::HMM package was originally written by Cory Spencer <cspencer@sfu.ca> of the
       Simon Fraser University Brinkman Laboratory.  It is currently maintained by Matthew Laird
       <matt@brinkman.mbb.sfu.ca>.

SEE ALSO

       Algorithm::HMM, Algorithm::HMM::Hit::Global, Algorithm::HMM::Hit::Domain