NAME

       Bio::AlignIO::psi - Read/Write PSI-BLAST profile alignment files

SYNOPSIS

       This module will parse PSI-BLAST output of the format seqid XXXX

DESCRIPTION

       This is a parser for psi-blast blocks.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = Bio::AlignIO::psi->new();
        Function: Builds a new Bio::AlignIO::psi object
        Returns : Bio::AlignIO::psi
        Args    :

   next_aln
        Title   : next_aln
        Usage   : $aln = $stream->next_aln()
        Function: returns the next alignment in the stream
        Returns : Bio::Align::AlignI object
        Args    : NONE

       See Bio::Align::AlignI

   write_aln
        Title   : write_aln
        Usage   : $stream->write_aln(@aln)
        Function: writes the NCBI psi-format object (.aln) into the stream
        Returns : 1 for success and 0 for error
        Args    : Bio::Align::AlignI object

       Bio::Align::AlignI