NAME

       Bio::Coordinate - Modules for working with biological coordinates

VERSION

       version 1.007001

SYNOPSIS

         # create Bio::Coordinate::Pairs or other Bio::Coordinate::MapperIs somehow
         $pair1; $pair2;

         # add them into a Collection
         $collection = Bio::Coordinate::Collection->new;
         $collection->add_mapper($pair1);
         $collection->add_mapper($pair2);

         # create a position and map it
         $pos = Bio::Location::Simple->new (-start => 5, -end => 9 );
         $res = $collection->map($pos);
         $res->match->start == 1;
         $res->match->end == 5;

         # if mapping is many to one (*>1) or many-to-many (*>*)
         # you have to give seq_id not get unrelevant entries
         $pos = Bio::Location::Simple->new
             (-start => 5, -end => 9 -seq_id=>'clone1');

DESCRIPTION

       Bio::Coordinate classes are used for working with various biological coordinate systems.
       See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.

FEEDBACK

   Mailing lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/%%7Bdist%7D

AUTHOR

       Heikki Lehvaslaiho <heikki@bioperl.org>

COPYRIGHT

       This software is copyright (c) by Heikki Lehvaslaiho.

       This software is available under the same terms as the perl 5 programming language system
       itself.