Provided by: libbio-perl-run-perl_1.7.1-3_all
NAME
Bio::DB::SoapEUtilities::GQueryAdaptor - Handle for Entrez SOAP GlobalQuery items
SYNOPSIS
my $fac = Bio::DB::SoapEUtilities->new(); # run a query, returning a GQueryAdaptor my $queries = $fac->egquery( -term => 'BRCA and human' )->run(-auto_adapt=>1); # all databases with hits my @dbs = $queries->found_in_dbs; # queries by database my $prot_count = $queries->query_by_db('prot')->count; # iterate over gquery while ( my $q = $queries->next_query ) { my $db = $q->db; my $count = $q->count; my $status = $q->status; }
DESCRIPTION
This adaptor provides an iterator ("next_query()") and other convenience functions for parsing NCBI Entrez EUtility "egquery" SOAP results.
SEE ALSO
Bio::DB::SoapEUtilities
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Mark A. Jensen
Email maj -at- fortinbras -dot- us
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = new Bio::DB::SoapEUtilities::GQueryAdaptor(); Function: Builds a new Bio::DB::SoapEUtilities::GQueryAdaptor object Returns : an instance of Bio::DB::SoapEUtilities::GQueryAdaptor Args : next_query() Title : next_query Usage : Function: return the next global query from the attached Result Returns : Args : found_in_dbs() Title : found_in_dbs Usage : Function: Return list of db names containing hits for the query term Returns : array of scalar strings Args : none query_by_db() Title : query_by_db Usage : Function: get gquery object by db name Returns : Args : db name (scalar string)