NAME

       Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign

SYNOPSIS

       No user serviceable parts.

DESCRIPTION

       This module is used internally by Bio::Graphics::Browser2::Realign.  If the module is
       present, the Smith-Waterman alignment will be faster.  Otherwise,
       Bio::Graphics::Browser2::Realign will fall back to a slower pure-perl implementation.

SEE ALSO

       Bio::Graphics::Browser2::Realign

AUTHOR

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2003 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same
       terms as Perl itself.  See DISCLAIMER.txt for disclaimers of warranty.