Provided by: libbio-perl-perl_1.7.2-2_all
NAME
Bio::Ontology::TermFactory - Instantiates a new Bio::Ontology::TermI (or derived class) through a factory
SYNOPSIS
use Bio::Ontology::TermFactory; # the default type is Bio::Ontology::Term my $factory = Bio::Ontology::TermFactory->new( -type => 'Bio::Ontology::GOterm'); my $term = $factory->create_object(-name => 'peroxisome', -ontology => 'Gene Ontology', -identifier => 'GO:0005777');
DESCRIPTION
This object will build Bio::Ontology::TermI objects generically.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
AUTHOR - Hilmar Lapp
Email hlapp at gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Ontology::TermFactory->new(); Function: Builds a new Bio::Ontology::TermFactory object Returns : Bio::Ontology::TermFactory Args : -type => string, name of a Bio::Ontology::TermI derived class. The default is Bio::Ontology::Term. See Bio::Ontology::TermI, Bio::Ontology::Term. create_object Title : create_object Usage : my $term = $factory->create_object(<named parameters>); Function: Instantiates new Bio::Ontology::TermI (or one of its child classes) This object allows us to genericize the instantiation of Term objects. Returns : Bio::Ontology::TermI compliant object The return type is configurable using new(-type =>"..."). Args : initialization parameters specific to the type of term object we want. Typically -name => $name -identifier => identifier for the term -ontology => ontology for the term See Bio::Ontology::TermI.