NAME

       Bio::Restriction::IO::withrefm - withrefm enzyme set

SYNOPSIS

       Do not use this module directly.  Use it via the Bio::Restriction::IO class.

DESCRIPTION

       This is the most complete format of the REBASE files, and basically includes all the data
       on each of the restriction enzymes.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing lists Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR

       Rob Edwards, redwards@utmem.edu

CONTRIBUTORS

       Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Mark A. Jensen, maj-at-fortinbras-dot-us

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are
       usually preceded with a _

   read
        Title   : read
        Usage   : $renzs = $stream->read
        Function: reads all the restrction enzymes from the stream
        Returns : a Bio::Restriction::Restriction object
        Args    : none

   _xln_sub
        Title   : _xln_sub
        Function: Translates withrefm coords to Bio::Restriction coords
        Args    : Bio::Restriction::Enzyme object, scalar integer (cut posn)
        Note    : Used internally; pass as a coderef to the B:R::Enzyme
                  constructor

   write
        Title   : write
        Usage   : $stream->write($renzs)
        Function: writes restriction enzymes into the stream
        Returns : 1 for success and 0 for error
        Args    : a Bio::Restriction::Enzyme
                  or a Bio::Restriction::EnzymeCollection object