NAME

       Bio::Roary::External::Mafft - Wrapper to run mafft

VERSION

       version 3.12.0

SYNOPSIS

       Wrapper to run mafft
          use Bio::Roary::External::Mafft;

               my $mafft_obj = Bio::Roary::External::Mafft->new(
                 input_filename  => $fasta_file,
                 output_filename => $fasta_file.'.aln',
                 job_runner      => 'Local'
               );
               $mafft_obj->run();

AUTHOR

       Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007