NAME

       Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full
       clusters each time

VERSION

       version 3.12.0

SYNOPSIS

       Run CDhit iteratively with reducing thresholds, removing full clusters each time
          use Bio::Roary::IterativeCdhit;

          my $obj = Bio::Roary::IterativeCdhit->new(
            output_cd_hit_filename   => 'output_cd_hit_filename.fa',
            output_combined_filename => 'output_combined_filename.fa',
            number_of_input_files     => 5,
            output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
          );
          $obj->run;

AUTHOR

       Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007