Provided by: libbio-perl-perl_1.7.2-2_all
NAME
Bio::Structure::Residue - Bioperl structure Object, describes a Residue
SYNOPSIS
#add synopsis here
DESCRIPTION
This object stores a Bio::Structure::Residue
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
AUTHOR - Kris Boulez
Email kris.boulez@algonomics.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new() Title : new() Usage : $residue = Bio::Structure::Residue->new( -id => 'human_id', ); Function: Returns a new Bio::Structure::Residue object from basic constructors. Probably most called from Bio::Structure::IO. Returns : a new Bio::Structure::Residue object atom() Title : atom Usage : Function: nothing useful until I get symbolic references to do what I want Returns : Args : add_atom() Title : add_atom Usage : Function: nothing useful until I get symbolic references to do what I want Returns : Args : chain() Title : chain Usage : $chain = $residue->chain($chain) Function: Sets the Chain this Residue belongs to Returns : Returns the Chain this Residue belongs to Args : reference to a Chain id() Title : id Usage : $residue->id("TRP-35") Function: Gets/sets the ID for this residue Returns : the ID Args : the ID DESTROY() Title : DESTROY Usage : Function: destructor ( get rid of circular references ) Returns : Args : _remove_atoms() Title : _remove_atoms Usage : Function: Removes the atoms attached to a Residue. Tells the atoms they don't belong to this Residue any more Returns : Args : _remove_chain() Title : _remove_chain Usage : Function: Removes the Chain this Residue is atttached to. Returns : Args : _grandparent() Title : _grandparent Usage : Function: get/set a symbolic reference to our grandparent Returns : Args :