NAME

         GO::IO::go_assoc - dump GO terms as OBD XML

SYNOPSIS

           my $apph = GO::AppHandle->connect(-d=>$go, -dbhost=>$dbhost);
           my $term = $apph->get_term({acc=>00003677});

           #### ">-" is STDOUT
           my $out = new FileHandle(">-");

           my $ga_out = GO::IO::go_assoc->new(-output=>$out);
           $ga_out->write_term($term);

       OR:

           my $apph = GO::AppHandle->connect(-d=>$go, -dbhost=>$dbhost);
           my $graph = $apph->get_node_graph(-acc=>00003677, -depth=>2);
           my $out = new FileHandle(">-");

           my $ga_out = GO::IO::go_assoc->new(-output=>$out);
           $ga_out->write_graph($graph);

DESCRIPTION

       Utility class to dump GO terms as OBD XML.  Currently, you just call start_document,
       write_term for each term, then end_document.

   new
           Usage   - my $ga_out = new GO::IO::go_assoc(-output=>$out);
           Returns - Output emitter.
           Args    - Output FileHandle

       Initializes the writer object.  To write to standard out, do:

       my $out = new FileHandle(">-"); my $ga_out = new GO::IO::go_assoc($out);

   cgi_header
           Usage   - $ga_out->cgi_header;
           Returns - None
           Args    - None

       cgi_header prints the "Content-type: text/plain" statement.  If creating a CGI script, you
       should call this before further action.

   write_graph
           Usage   - $ga_out->write_graph(-graph=>$graph);
           Returns - None
           Args    -graph=>$graph,
                   -deep=>1 or 0,           # optional, default 0.
                   -qualifier=>1 or 0,      # optional, default 1.
                   -with=>1 or 0,           # optional, default 1.
                   -object_name=>1 or 0,    # optional, default 1.
                   -object_synonym=>1 or 0, # optional, default 1.

   write_term_list
           Usage   - $ga_out->write_term_list();
           Returns - None
           Args    -term_listref=>$term_listref,
                   -deep=>1 or 0,           # optional, default 0.
                   -qualifier=>1 or 0,      # optional, default 1.
                   -with=>1 or 0,           # optional, default 1.
                   -object_name=>1 or 0,    # optional, default 1.
                   -object_synonym=>1 or 0, # optional, default 1.

   write_term
           Usage   - $ga_out->write_term();
           Returns - None
           Args    -term=>$term,
                   -deep=>1 or 0,           # optional, default 0.
                   -qualifier=>1 or 0,      # optional, default 1.
                   -with=>1 or 0,           # optional, default 1.
                   -object_name=>1 or 0,    # optional, default 1.
                   -object_synonym=>1 or 0, # optional, default 1.