NAME

       RG::Utils::Copf - Rost Lab perl utilities

SYNOPSIS

       use RG::Utils::Copf;

FUNCTIONS

       See module source for description.

       amino_acid_convert_3_to_1
       amino_acid_convert_3_to_1_ini
       brIniErr
       brIniGetArg
       brIniHelp
       brIniHelpLoop
       brIniHelpRdItself
       brIniRdDef
       brIniSet
       brIniWrt
       bynumber
       bynumber_high2low
       cleanUp
       complete_dir
       completeDir
       convAliGen
       convDsspGen
       convFastamul2many
       convFssp2Daf
       convFsspGen
       convGcg2fasta
       convHssp2seq
       convHsspGen
       convMsf2saf
       convPdb2seq
       convPdbGen
       convPhd2dssp
       convPhd2seq
       convPhdGen
       convPir2fasta
       convPirmulGen
       convSaf2many
       convSeq2fastaPerl
       convSeq2seq
       convSeq2seqOld
       convSeqGen
       convSwiss2fasta
       copf
       dsspGetChain
       dsspRdSeq
       dsspWrtFromPhd
       errSbr
       errSbrMsg
       fastaRdGuide
       fastaRdMul
       fastaWrt
       fastaWrtMul
       fctRunTimeLeft
       fctSeconds2time
       gcgRd
       gcgWrt
       getDistanceNewCurveIde
       getFileFormatQuick
       get_in_keyboard
       get_range
       get_rangeHyphen
       getSysARCH
       hsspCorrectNali
       hsspGetChain
       hsspGetChainLength
       hsspRdAli
       hsspRdHeader
       hsspRdSeqSecAccOneLine
       ini
       iniDef
       iniHelpLoc
       is_chain
       isDaf
       is_dssp
       isFasta
       isFastaMul
       is_fssp
       isGcg
       is_hssp
       isMsf
       isPdb
       is_pdbid
       isPhdAcc
       isPhdBoth
       isPhdHtm
       isPhdSec
       isPir
       isPirMul
       is_ppcol
       isRdb
       is_rdb_htmref
       is_rdb_htmtop
       is_rdb_nnDb
       isSaf
       is_strip
       isSwiss
       msfBlowUp
       msfCheckFormat
       msfCompress
       msfCountNali
       msfRd
       msfShorten
       msfWrt
       open_file
       pdbExtrSequence
       pirRdMul
       pirWrtMul
       pirWrtOne
       rdRdbAssociative
       rdRdbAssociativeNum
       safCompress
       safRd
       safWrt
       seqGenWrt
       swissRdSeq
       sysDate
       sysGetUserLoc
       sysRunProg
       wrtLoc

VARIABLES

AUTHOR

       B. Rost <rost@rostlab.org> L. Kajan <lkajan@rostlab.org>

SEE ALSO

       Main website
           <http://rostlab.org/>