NAME

       libpwiz - library to perform proteomics data analyses (runtime)

DESCRIPTION

       This  manual  page  documents  briefly  the  libpwiz  package  that  brings  a library library to perform
       proteomics data analyses. ProteoWizard provides a modular  and  extensible  set  of  open-source,  cross-
       platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool
       creation by providing a robust, pluggable development framework that simplifies  and  unifies  data  file
       access, and performs standard chemistry and LCMS dataset computations.

EXAMPLES OF BINARIES -Ipwiz/data/msdata/ramp

       All  these  programs  (in  `/usr/lib/libpwizX/example-files'  could be built using the command line shown
       after the binary name:

       - mscat (g++ -I /usr/include/libpwiz -l pwiz mscat.cpp -o mscat)

       - hello_analyzer_2 (g++ -I /usr/include/libpwiz -l pwiz hello_analyzer_2.cpp -o hello_analyzer_2)

       - hello_analyzer (g++ -I /usr/include/libpwiz -l pwiz hello_analyzer.cpp -o hello_analyzer)

       - hello_msdata (g++ -I /usr/include/libpwiz -l pwiz hello_msdata.cpp -o hello_msdata)

       - txt2mzml (g++ -I /usr/include/libpwiz -l pwiz  -l  boost_filesystem  -l  boost_system  txt2mzml.cpp  -o
       txt2mzml)

       -   hello_ramp   (g++  -I  /usr/include/libpwiz  -I  /usr/include/libpwiz/pwiz/data/msdata/ramp  -l  pwiz
       hello_ramp.cpp -o hello_ramp)

       -   write_example_files   (g++   -I   /usr/include/libpwiz    -l    pwiz    write_example_files.cpp    -o
       write_example_files)

       -   write_mzid_example_files   (g++  -I  /usr/include/libpwiz  -l  pwiz  write_mzid_example_files.cpp  -o
       write_mzid_example_files)

       - write_proteome_example_files (g++ -I /usr/include/libpwiz -l pwiz  write_proteome_example_files.cpp  -o
       write_proteome_example_files)

       -  write_traml_example_files  (g++  -I  /usr/include/libpwiz  -l  pwiz  write_traml_example_files.cpp  -o
       write_traml_example_files)

       The -I /usr/include/libpwiz specifies the location of  the  include  files  for  the  whole  proteowizard
       project.  The -l pwiz specifies the libpwiz library to be linked-in so as to build the binaries.

BIBLIOGRAPHICAL REFERENCE TO BE CITED

       Chambers,  M.C.,  MacLean, B., Burke, R., Amode, D., Ruderman, D.L., Neumann, S., Gatto, L., Fischer, B.,
       Pratt, B., Egertson, J., Hoff, K., Kessner, D.,  Tasman,  N.,  Shulman,  N.,  Frewen,  B.,  Baker,  T.A.,
       Brusniak,  M.-Y.,  Paulse, C., Creasy, D., Flashner, L., Kani, K., Moulding, C., Seymour, S.L., Nuwaysir,
       L.M., Lefebvre, B., Kuhlmann, F., Roark, J., Rainer, P., Detlev, S., Hemenway, T., Huhmer, A., Langridge,
       J.,  Connolly,  B.,  Chadick,  T.,  Holly, K., Eckels, J., Deutsch, E.W., Moritz, R.L., Katz, J.E., Agus,
       D.B., MacCoss, M., Tabb, D.L. & Mallick, P. (2012) A cross-platform toolkit  for  mass  spectrometry  and
       proteomics.  Nature Biotechnology, 30. 10.1038/nbt.2377.

SEE ALSO

       libpwiz-dev(3), libpwiz-doc(7),

       The library is documented fully in the doxygen-extacted documentation that is packaged in libpwiz-doc.

AUTHOR

       This  manual  page  was  written  by Filippo Rusconi <lopippo@debian.org>. Permission is granted to copy,
       distribute and/or modify this document under the terms of the GNU  General  Public  License,  Version  3,
       published by the Free Software Foundation.

        On  a  Debian  system  the complete text of the GNU General Public License version 3 can be found in the
       file `/usr/share/common-licenses/GPL-3'.

                                                  October 2012                                        LIBPWIZ(3)