Provided by: subread_2.0.0+dfsg-1_amd64
NAME
flattenGTF - Flatten features included in a GTF annotation and save the modified annotation to a SAF format file.
USAGE
flattenGTF [options] -a <input_file> -o <output_file> ## Mandatory arguments: -a <file> Name of an annotation file in GTF/GFF format. -o <file> Name of output file. ## Optional arguments: -t <string> Specify feature type in a GTF annotation. 'exon' by default. Features with the specified feature type are extracted from the annotation for processing. -g <string> Specify attribute type in GTF annotation. 'gene_id' by default. This attribute type is used to group features into metafeatures. -C Merging overlapping exons into multiple non-overlapping exons but all the edges are kept.