NAME

       optimir - Integrating genetic variations in miRNA alignment

SYNOPSIS

       optimir [options]

DESCRIPTION

       OptimiR  is  a  miRSeq data alignment workflow. It integrates genetic information to assess the impact of
       variants on miRNA expression.  OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs,
       isomiRs and polymiRs from  miRSeq  data,  and  study  the  impact  of  genetic  variations  on  polymiRs'
       expression.

OPTIONS

   Basic options
       -h, --help
              Produce help message

   Subcommands
       process
              Process a single fastq file with the OptimiR workflow

       summarize
              Summarize results of previously processed samples

       libprep
              Only  prepare  small  RNA  alignment  library sequences that integrates genetic variants (required
              before processing multiple samples in parallel)

SEE ALSO

       https://github.com/FlorianThibord/OptimiR

AUTHOR

       OptimiR was written by Florian Thibord.

                                                   April 2019                                         OPTIMIR(1)