NAME

       plot_features - determine features of organisms, clades, taxonomic units, genes

SYNOPSIS

       plot_features  [-h]  [--width  WIDTH]  [--height  HEIGHT]  [--top  TOP]  [--bot  BOT]  [--title_font_size
       TITLE_FONT_SIZE] [--class_font_size CLASS_FONT_SIZE] [--class_label_pos {up,down}]  [--subcl_mean  {y,n}]
       [--subcl_median  {y,n}]  [--font_size  FONT_SIZE]  [-n  flt] [--format {png,pdf,svg}] [-f {all,diff,one}]
       [--feature_name FEATURE_NAME]  [--feature_num  FEATURE_NUM]  [--archive  {zip,none}]  [--background_color
       {k,w}] [--dpi DPI] INPUT_FILE INPUT_FILE OUTPUT_FILE

DESCRIPTION

       Cladoplot

OPTIONS

   positional arguments:
       INPUT_FILE
              dataset files

       INPUT_FILE
              LEfSe output file

       OUTPUT_FILE
              the file for the output (the zip file if an archive is required, the output directory otherwise)

   optional arguments:
       -h, --help
              show this help message and exit

       --width WIDTH

       --height HEIGHT

       --top TOP
              set maximum y limit (-1.0 means automatic limit)

       --bot BOT
              set minimum y limit (default 0.0, -1.0 means automatic limit)

       --title_font_size TITLE_FONT_SIZE

       --class_font_size CLASS_FONT_SIZE

       --class_label_pos {up,down}

       --subcl_mean {y,n}

       --subcl_median {y,n}

       --font_size FONT_SIZE

       -n flt
              unused

       --format {png,pdf,svg}
              the format for the output file

       -f {all,diff,one}
              whether  to plot all features (all), only those differentially abundant according to LEfSe or only
              one (the one given with --feature_name)

       --feature_name FEATURE_NAME
              The name of the feature to plot (levels separated by .)

       --feature_num FEATURE_NUM
              The number of the feature to plot

       --archive {zip,none}

       --background_color {k,w}
              set the color of the background

       --dpi DPI

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

plot_features 1.0.8                              September 2019                                 PLOT_FEATURES(1)