NAME

       openms-common - library for LC/MS data management and analysis - common files

DESCRIPTION

       This  manual  page  documents  briefly  the  openms-common  package that ships shared data for the OpenMS
       software framework. OpenMS offers an infrastructure for  the  development  of  mass  spectrometry-related
       software  and powerful 2D and 3D visualization solutions. OpenMS offers analyses for various quantitation
       protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It provides  build-in  algorithms
       for  de-novo identification and database search, as well as adapters to other state-of-the art tools like
       X!Tandem, Mascot, OMSSA… OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and
       supports easy integration of tools into workflow engines like Knime, Galaxy, WS-Pgrade,  and  TOPPAS  via
       the TOPPtools concept and a unified parameter handling.

BIBLIOGRAPHICAL REFERENCE TO BE CITED

       Marc  Sturm,  Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer,
       Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher  (2008)   OpenMS  –  an  Open-
       Source Software Framework for Mass Spectrometry.  BMC Bioinformatics, 9:163. doi:10.1186/1471-2105-9-163.

SEE ALSO

       libopenms(3), topp(1), openms(7), openms-doc(7).

       The program is documented fully in the Tutorials, that are packaged in openms-doc.

AUTHOR

       This  manual  page  was  written  by Filippo Rusconi <lopippo@debian.org>. Permission is granted to copy,
       distribute and/or modify this document under the terms of the GNU  General  Public  License,  Version  3,
       published by the Free Software Foundation.

        On  a  Debian  system  the complete text of the GNU General Public License version 3 can be found in the
       file `/usr/share/common-licenses/GPL-3'.

                                                  November 2012                                 OPENMS-COMMON(7)