NAME

       all_dists - Given a tree in Newick (*.nh) format, report distances

DESCRIPTION

       Given  a  tree  in Newick (*.nh) format, report distances between all pairs of leaves.  If multiple files
       are given, then distances are computed by averaging across models, and statistics describing  the  errors
       in the estimates are reported (can be useful for bootstrapping; see 'phyloBoot --dump-mods').

USAGE

       all_dists <tree.nh> [<tree2.nh> <tree3.nh>...]

OPTIONS

       --mod, -m

              Read from tree model (*.mod) file(s) instead of Newick file.

       --tree, -t <file>|<string>

       Use leaf names from given tree.
              Useful when primary files

              use numbers rather than names.

       --help, -h Print this help message.