NAME

       bam-read  -  Parse  bam  files  after  multi-mapping  reads have been assigned and aggregate read mapping
       information by contig.

SYNOPSIS

       Currently captured:

        - name
        - bases mapped
        - edit distance
        - bridges
        - length
        - reads mapped
        - both mapped
        - proper pair
        - good
        - uncovered bases
        - mean mapq
        - probability of coverage not being segmented

DESCRIPTION

       bam-read version 1.0.0 Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>

       example: bam-read in.bam out.csv 0.95

       Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>

       example: bam-read in.bam out.csv 0.95