NAME

       bamchecksort - split BAM file into a set of BAM files

SYNOPSIS

       bamchecksort [options]

DESCRIPTION

       bamchecksort  reads  a  BAM  file via standard input and creates a set of output BAM files containing the
       alignments in the input. For query name sorted files the program strictly checks the order  used  by  the
       bamsort program, i.e. it requires reads marked as read 1 to appear before such marked as read 2 for lines
       with equal names.

       The following key=value pairs can be given:

       verbose=<1>: Valid values are

       1:     print progress report on standard error

       0:     do not print progress report

AUTHOR

       Written by German Tischler.

REPORTING BUGS

       Report bugs to <tischler@mpi-cbg.de>

COPYRIGHT

       Copyright © 2009-2013 German Tischler, © 2011-2013 Genome Research  Limited.   License  GPLv3+:  GNU  GPL
       version 3 <http://gnu.org/licenses/gpl.html>
       This  is  free software: you are free to change and redistribute it.  There is NO WARRANTY, to the extent
       permitted by law.