NAME

       beauti2 - matches beast2-mcmc

SYNOPSIS

       beauti2  -template  [template  file]  -nex  [nexus  data file] -xmldat [beast xml file] -xml [beast file]
       -exitaction [writexml|usetemplate|usexml] -out [output file name] -capture -v -version -h -help

DESCRIPTION

       BEAST is a cross-platform program for Bayesian MCMC analysis  of  molecular  sequences.  It  is  entirely
       orientated  towards  rooted,  time-measured  phylogenies inferred using strict or relaxed molecular clock
       models. It can be used as a method of reconstructing phylogenies but is  also  a  framework  for  testing
       evolutionary  hypotheses  without conditioning on a single tree topology. BEAST uses MCMC to average over
       tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple
       to  use  user-interface program for setting up standard analyses and a suit of programs for analysing the
       results.

       This BEAUTI version matches BEAST2-MCMC.

OPTIONS

       -template [template file] : BEAUti template to be used. Default templates/Standard.xml

       -nex [nexus data file] : nexus file to be read using template, multiple -nex arguments are allowed

       -xmldat [beast xml file] : as -nex but with BEAST 1 or 2 xml file instead of nexus file

       -xml [beast file] : BEAST 2 XML file to be loaded

       -exitaction [writexml|usetemplate|usexml] : what to do after processing arguments

       -out [output file name] : file to be written

       -capture : captures stdout and stderr and make them available under Help/Messages menu

       -v, -version : print version

       -h, -help : print this help message

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.