NAME

       chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes
       to programs like murasaki

SYNOPSIS

       chromostitch.pl [options] <stitch file> <chromosome1 chromosome2 ... >

       Options:
       --sort           sorts everything
       --output=<file>  altnerate way of specifying an output file

PARAMETERS

       stitch file output file (overwrites)
       chromosome1 chromosome2 ... List of chromosome input files
       B--output=<file> Alternate way of specifying an output file
       B--sort Always sort EVERYTHING. (Allows for nicely sorted lists from sloppy input of filenames from like
       multiple directories of *.gbk or something)

DESCRIPTION

       Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like
       murasaki