NAME

       fibxform - Apply coordinate transformations to point coordinates in .fib file.

SYNOPSIS

       fibxform XformList

DESCRIPTION

       A  file  with fiber tracking results from the UNC Fiber Tracking tool is read from Standard Input and one
       or more (concatenated) coordinate transformations are applied to all fiber point coordinates. The  result
       is written to Standard Output, again in UNC fiber file format.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --inversion-tolerance <double>
            Numerical  tolerance  of  B-spline  inversion  in  mm.  Smaller  values  will  lead to more accurate
            inversion, but may increase failure rate.  [Default: 0.001]

       --source-image <image-path>
            Set source image of the transformation (i.e., an image defining the space in  which  fiber  tracking
            was performed) to correct for differences in orientation and coordinate space.  [Default: NONE]

       --target-image <image-path>
            Set target image of the transformation (i.e., the image that the fiber track points are mapped into)
            to correct for differences in orientation and coordinate space.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.  Maurer,  Daniel  B.
       Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK  is  developed  with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and
       Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through  September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.