NAME

       cnvkit_access - List the locations of accessible sequence regions in a FASTA file.

DESCRIPTION

       usage: cnvkit access [-h] [-s MIN_GAP_SIZE] [-x EXCLUDE] [-o FILENAME]

              fa_fname

   positional arguments:
       fa_fname
              Genome FASTA file name

   optional arguments:
       -h, --help
              show this help message and exit

       -s MIN_GAP_SIZE, --min-gap-size MIN_GAP_SIZE
              Minimum  gap  size  between  accessible  sequence  regions.   Regions  separated by less than this
              distance will be joined together. [Default: 5000]

       -x EXCLUDE, --exclude EXCLUDE
              Additional regions to exclude, in BED format. Can be used multiple times.

       -o FILENAME, --output FILENAME
              Output file name