NAME

       cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.

           Equivalently, use the THetA results file to convert CNVkit .cns segments to
           integer copy number calls.

DESCRIPTION

       usage: cnvkit import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]

              tumor_cns theta_results

   positional arguments:
              tumor_cns theta_results

   optional arguments:
       -h, --help
              show this help message and exit

       --ploidy PLOIDY
              Ploidy of normal cells. [Default: 2]

       -d DIRECTORY, --output-dir DIRECTORY
              Output directory name.