NAME

       cnvkit-reference2targets - Extract target and antitarget BED files from a CNVkit reference file.

DESCRIPTION

       usage: cnvkit-reference2targets [-h] [-o OUTPUT] reference

       Extract  target  and  antitarget  BED  files  from a CNVkit reference file. Once you have a stable CNVkit
       reference for your platform, you can use this script  to  drop  the  "bad"  bins  from  your  target  and
       antitarget  BED files and avoid unnecessarily calculating coverage in those bins during future runs. This
       script is also useful to recover the target and antitarget BED files that match the  reference  if  those
       BED files are missing or you're not sure which ones are correct.

   positional arguments:
       reference
              Reference file.

   optional arguments:
       -h, --help
              show this help message and exit

       -o OUTPUT, --output OUTPUT
              Output base name (extensions added automatically).