NAME

       cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and Y.

DESCRIPTION

       usage: cnvkit sex [-h] [-y] [-o FILENAME] filenames [filenames ...]

   positional arguments:
       filenames
              Copy number or copy ratio files (*.cnn, *.cnr).

   optional arguments:
       -h, --help
              show this help message and exit

       -y, --male-reference, --haploid-x-reference
              Assume  inputs  were normalized to a male reference (i.e. female samples will have +1 log-coverage
              of chrX; otherwise male samples would have -1 chrX).

       -o FILENAME, --output FILENAME
              Output table file name.