NAME

       cod_predeposition_check - filter and check pairs of CIF and Fobs files for suitability for
       deposition to COD database.

SYNOPSIS

       cod_predeposition_check --options input.cif input*.cif

DESCRIPTION

       Filter and check pairs of CIF and  Fobs  files  for  suitability  for  deposition  to  COD
       database.

OPTIONS

       -d, --database  cod
                         Use database "cod" to query for structures.

       -h, --host   www.crystallography.net

       -s, --server www.crystallography.net
                         Query COD database on the host 'www.crystallography.net'.

       -l, --localhost
                         Use database server on the localhost to query the COD
                         database.

       -p, --port 3306
                         Use use the specified port (default 3306) to query
                         structures.

       -t, --table  data
                         Use SQL table 'data' to query for structures.

       -u, --user cod_reader
                         Use user name 'cod_reader' to access COD database;
                         this reader should be granted SELECT privilege, i.e.
                         should be able to read the COD database, without
                         supplying a password.

       --password
                         Use the specified password (default empty) to connect.

       --platform 'SQLite'
                         Use the SQL database platform 'SQLite' to query
                         structures (default 'mysql').

       --cif input1.cif
                         Specify a CIF file to be deposited. Multiple CIF files
                         can be provided in a way like this:
                         cod_predeposition_check --cif input1.cif --cif input2.cif

       --hkl, --fobs input1.hkl
                         Specify a Fobs file to be deposited. Multiple Fobs files
                         can be provided in way like this:
                         cod_predeposition_check --hkl input1.hkl --hkl input2.hkl
                         The order of the files is important in order to pair CIF
                         and Fobs files correctly.

       --type, --deposition-type 'prepublication'
                         Specify the deposition type under which the structure
                         is to be deposited (default 'published').

       --author-name 'Doe, J.'
                         Use the specified name as the name of the person
                         depositing the files.

       --journal 'The Journal'
                         Use the specified journal name as if it was supplied
                         by the depositor during the 'prepublication' type
                         deposition.

       --hold-period 3
                         Use the specified hold period as if it was supplied by
                         the depositor.

       --replace
                         Treat given files as replacements for previously
                         deposited data.

       --no-replace, --dont-replace
                         Do not treat given files as replacements for previously
                         deposited data (default).

       --release
                         Treat given files as if they were previously deposited
                         as prepublication material and should now be released
                         into the public domain.

       --no-release, --dont-release
                         Do not treat given files as if they were previously
                         deposited as prepublication material and should now
                         be released into the public domain (default).

       --bypass-checks
                         Do not check CIF files for compliance with COD
                         requirements.

       --dont-bypass-checks, --no-bypass-checks
                         Check CIF files for compliance with COD requirements
                         (default).

       --split-pdcif
                         Output powder diffraction data blocks as a HKL file.

       --dont-split-pdcif, --no-split-pdcif
                         Output powder diffraction data blocks as part of the
                         CIF file (default).

       --print-timestamps
                         Print timestamps to STDOUT at the start and end of
                         each CIF file deposition.

       --no-print-timestamps, --dont-print-timestamps
                         Do not print timestamps to STDOUT at the start and end
                         of each CIF file deposition (default)

       --tmp-dir, --temp-dir
                         Use the specified temporary directory (default './').

       --use-perl-parser
                         Use Perl parser to parse CIF files.

       --use-c-parser
                         Use C parser to parse CIF files (default).

       --help, --usage
                         Output a short usage message (this message) and exit.

       --version
                         Output version information and exit.

REPORTING BUGS

       Report cod_predeposition_check bugs using e-mail: cod-bugs@ibt.lt

                                                                       COD_PREDEPOSITION_CHECK(1)