NAME

       convert_image - convert images to CBF format using a template

SYNOPSIS

       convert_image [options]

DESCRIPTION

       convert_image is a program that can convert images from a MAR180, MAR300, MAR345 or ADSC CCD detector and
       convert them to CBF format.

       convert_image requires two arguments: imagefile and cbffile. Those are the primary input and output.  The
       detector type is extracted from the image file or from the command line, converted to lower case and used
       to construct the name of a template cbf file to use for the copy. The template file name is of  the  form
       template_name_columnsxrows.

       To run makecbf with the example image, type:

       makecbf example.mar2300 test.cbf

OPTIONS

       -i input_img
              (default: stdin) the input file as an image in smv, mar300, or mar345 format.  If input_img is not
              specified or is given as "-", it is copied from stdin to a temporary file.

       -p template_cbf
              the template for the final cbf to be produced.  If template_cbf  is  not  specified  the  name  is
              constructed   from   the   first   token   of   the   detector   name   and   the  image  size  as
              template_<type>_<columns>x<rows>.cbf

       -o output_cbf
              (default: stdout ) the output cbf combining the image and the template.  If the output_cbf is  not
              specified or is given as "-", it is written to stdout.

       -d detectorname
              a detector name to be used if none is provided in the image header.

       -F     when writing packed compression, treat the entire image as one line with no averaging

       -m [x|y|x=y]
              (default x=y, square arrays only) mirror the array in the x-axis (y -> -y) in the y-axis (x -> -x)
              or in x=y ( x -> y, y-> x)

       -r n   rotate the array n times 90 degrees counter clockwise x -> y, y -> -x for each rotation, n = 1,  2
              or 3

       -R     if setting a beam center, set reference values of axis settings as well as standard settings

       -z distance
              detector distance along Z-axis

       -c category_alias=category_root

       -t tag_alias=tagroot
              map  the  given alias to the given root, so that instead of outputting the alias, the root will be
              presented in the output cbf instead.  These options may be repeated as many times as needed.

SEE ALSO

       cif2cbf(1), img2cif(1), makecbf(1).

AUTHOR

       convert_image was written by Herbert J. Bernstein.

       This manual page was written by Morten Kjeldgaard <mok@bioxray.au.dk>, for the Debian project (but may be
       used by others).

                                                   April, 2008                                  CONVERT_IMAGE(1)