NAME

       ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern

SYNOPSIS

       ecogrep [options] filename

DESCRIPTION

       ecoPCR  is  an  electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode
       primers quality.

       This program belongs to the exoPCR package.

OPTIONS

       -1    : [FIRST] : compare the given pattern with direct strand oligonucleotide

       -2     : [SECOND] : compare the given pattern with reverse strand oligonucleotide

       -d     : [D]atabase containing taxonomic information

       -e     : [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by default)

       -p     : [P]attern : oligonucleotide pattern

       -h     : [H]elp : print <this> help

       -i     : [I]gnore subtree under given taxonomic id

       -r     : [R]estrict search to subtree under given taxomic id

       -v     : in[V]ert the sense of matching, to select non-matching lines.

       argument:
              ecoPCR output file name

SEE ALSO

       http://www.grenoble.prabi.fr/trac/ecoPCR/