NAME

       extractBCITrees  - part of mauveAligner package reads all trees and their posterior from a set of MrBayes
       .trprobs files

SYNOPSIS

       extractBCITrees <random seed> <BCI threshold> <max output trees> <MrBayes .trprobs input  file  1  ..  N>
       <nexus output file>

DESCRIPTION

       This  program  reads  all  trees  and  their  posterior from a set of MrBayes .trprobs files and sums and
       normalizes posteriors for each topology.  All trees that meet a Bayes Credible Interval threshold will be
       saved,  up  to  some  maximum  number  of trees.  <BCI Threshold> A number between 0 and 1 giving the BCI
       threshold.  0.9 is a good choice.  <max output trees>      Limit the output  to  this  many  trees.   All
       trees in the input file must have the same number of taxa and the same taxon labels