NAME

       extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file

SYNOPSIS

       extractTranscriptInfo.py [options] <inputFile> <outputFile>

DESCRIPTION

              This  program extracts information about transcripts from reference Fasta file.  This is partially
              replaced by using SAM header, which however does not  include  information  about  transcript-gene
              grouping.   Current  version of parseAlignment extracts this information from a reference sequence
              file (making this script obsolete).

OPTIONS

       -h, --help
              show this help message and exit

       -v, --verbose
              Verbose output

       -t TYPE, --type=TYPE
              Type of file to parse: ensembl, cuff, other