NAME

       gapcleaner - Find the most-parsimonious ordering of indels

SYNOPSIS

       gapcleaner <multi-FASTA or Stockholm alignment>

DESCRIPTION

       gapcleaner from FSA 1.15.9

       Find the most-parsimonious ordering of indels.  Finds the minimal chain decomposition of the POSET of the
       alignment; this corresponds to minimizing the number of gap-openings across the sequences.

       Input protein alignment must be in multi-FASTA or Stockholm format.

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.