NAME

       genbank_get_genomes_by_taxon.py - genbank get genomes by taxon

SYNOPSIS

       genbank_get_genomes_by_taxon.py  [-h]  -o  OUTDIRNAME  [-t  TAXON]  [-v]  [-f] [--noclobber] [-l LOGFILE]
       [--format FORMAT] --email EMAIL [--retries RETRIES] [--batchsize BATCHSIZE] [--timeout TIMEOUT]

OPTIONS

   optional arguments:
       -h, --help
              show this help message and exit

       -o OUTDIRNAME, --outdir OUTDIRNAME
              Output directory (required)

       -t TAXON, --taxon TAXON
              NCBI taxonomy ID

       -v, --verbose
              Give verbose output

       -f, --force
              Force file overwriting

       --noclobber
              Don't nuke existing files

       -l LOGFILE, --logfile LOGFILE
              Logfile location

       --format FORMAT
              Output file format [gbk|fasta]

       --email EMAIL
              Email associated with NCBI queries (required)

       --retries RETRIES
              Number of Entrez retry attempts per request.

       --batchsize BATCHSIZE
              Entrez record return batch size

       --timeout TIMEOUT
              Timeout for URL connection (s)

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

genbank_get_genomes_by_taxon.py 0.2.9             November 2019               GENBANK_GET_GENOMES_BY_TAXON.PY(1)